SNP Profiles of LV 20 [POU] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	CC	CC	GG	TT	TT	CC	CC	GG	TT	AA	CT	AA
1._RUQ_354	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
2._RUQ_354	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
3._LV_20_[POU]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
4._LV_20_[POU]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
5._LV_20_[POU]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
6._LV_20_[POU]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
7._LV_20_[POU]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
8._LV_20_[POU]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
9._GC-04-027-2-09	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
10._GC-04-027-2-09	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
11._GC-04-027-2-09	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
12._GC-04-027-2-09	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
13._RUQ_354	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	TT	AC	CT	CC	AA	CG	AA	CC	CT	CT	AA	CC	GG
1._RUQ_354	GG	_	_	_	CC	_	CG	_	CC	CT	_	_	_	_
2._RUQ_354	_	_	_	_	CC	_	CG	_	CC	_	_	_	_	GG
3._LV_20_[POU]	_	_	_	_	CC	_	CG	_	CC	_	_	_	_	GG
4._LV_20_[POU]	_	_	_	_	CC	_	CG	_	CC	_	_	_	_	GG
5._LV_20_[POU]	_	_	_	_	CC	_	CG	_	CC	_	_	_	_	AG
6._LV_20_[POU]	_	_	_	_	CC	_	CG	_	CC	_	_	_	_	AG
7._LV_20_[POU]	_	_	_	_	CC	_	CG	_	CC	_	_	_	_	AG
8._LV_20_[POU]	_	_	_	_	CC	_	CG	_	CC	_	_	_	_	AG
9._GC-04-027-2-09	GG	_	_	_	CC	_	CG	_	CC	CT	_	_	_	AG
10._GC-04-027-2-09	GG	_	_	_	CC	_	CG	_	CC	CT	_	_	_	AG
11._GC-04-027-2-09	GG	_	_	_	CC	_	CG	_	CC	CT	_	_	_	AG
12._GC-04-027-2-09	GG	_	_	_	CC	_	CG	_	CC	CT	_	_	_	AG
13._RUQ_354	GG	_	_	_	CC	_	CG	_	CC	AG	_	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	CC	GT	AG	TT	TT	AC	AA	CT	GG	AG	CC	AG	TT
1._RUQ_354	_	CC	GT	AG	_	_	AC	_	_	GG	-	_	AG	TT
2._RUQ_354	_	_	GT	_	_	_	_	_	_	GG	_	_	AG	_
3._LV_20_[POU]	_	_	GT	_	_	_	_	_	_	GG	_	_	AG	_
4._LV_20_[POU]	_	_	GT	_	_	_	_	_	_	GG	_	_	AG	_
5._LV_20_[POU]	_	_	GT	_	_	_	_	_	_	GG	_	_	AG	_
6._LV_20_[POU]	_	_	GT	_	_	_	_	_	_	GG	_	_	AG	_
7._LV_20_[POU]	_	_	GT	_	_	_	_	_	_	GG	_	_	AG	_
8._LV_20_[POU]	_	_	GT	_	_	_	_	_	_	GG	_	_	AG	_
9._GC-04-027-2-09	_	CT	GT	AG	_	_	AC	_	GG	GG	AG	_	AG	TT
10._GC-04-027-2-09	_	CT	GT	AG	_	_	AC	_	GG	GG	AG	_	AG	TT
11._GC-04-027-2-09	_	CT	GT	AG	_	_	AC	_	GG	GG	AG	_	AG	TT
12._GC-04-027-2-09	_	CT	GT	AG	_	_	AC	_	GG	GG	AG	_	AG	TT
13._RUQ_354	_	_	AC	AG	_	_	AC	_	CC	CC	AG	_	AG	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	AA	CT	AG	CT	CT	TT	AA	GT	GT	TT	AG	GG	CG
1._RUQ_354	_	_	_	_	_	_	_	_	GT	_	_	_	_	CG
2._RUQ_354	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
3._LV_20_[POU]	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
4._LV_20_[POU]	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
5._LV_20_[POU]	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
6._LV_20_[POU]	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
7._LV_20_[POU]	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
8._LV_20_[POU]	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
9._GC-04-027-2-09	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
10._GC-04-027-2-09	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
11._GC-04-027-2-09	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
12._GC-04-027-2-09	_	_	_	AG	_	CT	_	_	GT	_	_	_	_	CG
13._RUQ_354	_	_	_	AG	_	_	_	_	AC	_	_	_	_	CG

	57	58
_Input profile	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_354	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_354	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._LV_20_[POU]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._LV_20_[POU]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._LV_20_[POU]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._LV_20_[POU]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._LV_20_[POU]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._LV_20_[POU]	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-04-027-2-09	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-04-027-2-09	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-04-027-2-09	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-04-027-2-09	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._RUQ_354	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: LV_20_[POU] RUQ_354

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._LV_20_[POU] RUQ_354

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._LV_20_[POU] RUQ_354

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._LV_20_[POU]

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 562

Dapeng Zhang, 2016

4._LV_20_[POU]

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 563

Dapeng Zhang, 2016

5._LV_20_[POU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 8 > FP

Dapeng Zhang, 2016

6._LV_20_[POU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 4 > FP

Dapeng Zhang, 2016

7._LV_20_[POU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 3

Dapeng Zhang, 2016

8._LV_20_[POU]

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

12._LV_20_[POU] GC-04-027-2-09

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

13._LV_20_[POU] RUQ_354

73.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP421	17	TcSNP519	18	TcSNP522	19	TcSNP529	20	TcSNP546
21	TcSNP577	22	TcSNP589	23	TcSNP591	24	TcSNP602	25	TcSNP640
26	TcSNP642	27	TcSNP644	28	TcSNP645	29	TcSNP660	30	TcSNP702
31	TcSNP723	32	TcSNP731	33	TcSNP739	34	TcSNP800	35	TcSNP823
36	TcSNP835	37	TcSNP836	38	TcSNP872	39	TcSNP899	40	TcSNP945
41	TcSNP998	42	TcSNP999	43	TcSNP1010	44	TcSNP1019	45	TcSNP1053
46	TcSNP1062	47	TcSNP1112	48	TcSNP1144	49	TcSNP1205	50	TcSNP1230
51	TcSNP1253	52	TcSNP1275	53	TcSNP1293	54	TcSNP1401	55	TcSNP1404
56	TcSNP1458	57	TcSNP1524	58	TcSNP1527